STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_000458Bromodomain-containing protein. (526 aa)    
Predicted Functional Partners:
Ccrd_021496
TAFII55 protein, conserved region.
    
 
 0.695
Ccrd_017364
Helicase, C-terminal.
    
 
 0.649
Ccrd_009041
DNA methyltransferase 1-associated 1.
    
 
 0.457
Ccrd_008296
Uncharacterized protein.
    
 
 0.457
Ccrd_012262
RuvB-like helicase; Belongs to the RuvB family.
    
 
 0.422
Ccrd_007431
F-box domain, cyclin-like protein.
    
 
 0.420
Ccrd_014806
F-box domain, cyclin-like protein.
    
 
 0.420
Ccrd_021913
Peptidase S16, lon N-terminal.
    
 
 0.419
Ccrd_014424
RuvB-like helicase; Belongs to the RuvB family.
    
 
 0.419
Ccrd_008014
Bromodomain-containing protein.
    
 
 0.418
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.