STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_000967Zinc finger, RING/FYVE/PHD-type. (231 aa)    
Predicted Functional Partners:
Ccrd_021772
HECT-like protein.
     
 0.712
Ccrd_021771
Armadillo-like helical.
     
 0.712
Ccrd_001397
Armadillo.
     
 0.677
Ccrd_017610
Armadillo.
     
 0.677
Ccrd_008306
Ribosomal protein S27a.
    
  0.522
Ccrd_002292
Ribosomal protein S27a.
    
  0.522
Ccrd_011574
Transcriptional coactivator/pterin dehydratase.
      
 0.476
Ccrd_006867
Zinc finger, RING/FYVE/PHD-type.
     
 0.472
Ccrd_008530
Molybdenum cofactor biosynthesis, MoeB.
    
  0.441
Ccrd_022778
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
    
  0.441
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.