STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_023764AB hydrolase-1 domain-containing protein. (567 aa)    
Predicted Functional Partners:
Ccrd_004982
Uncharacterized protein.
 
 0.530
Ccrd_021160
Acyl carrier protein-like protein.
    
 0.520
Ccrd_008165
CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.
 
 
 0.515
Ccrd_008164
CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.
 
 
 0.509
Ccrd_017143
Cystathionine beta-synthase, core.
  
  
  0.493
Ccrd_002887
Protein kinase-like domain-containing protein.
  
    0.469
Ccrd_023233
Heme peroxidase; Belongs to the peroxidase family.
  
     0.454
Ccrd_011693
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
    
 0.445
Ccrd_017952
Uncharacterized protein.
  
     0.429
Ccrd_007357
Uncharacterized protein.
  
     0.423
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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