STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_022658Ribosomal_L2_C domain-containing protein. (279 aa)    
Predicted Functional Partners:
Ccrd_012381
Nucleic acid-binding, OB-fold.
   
 
 0.998
Ccrd_000534
F-box domain, cyclin-like protein.
   
 0.998
Ccrd_004732
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 
 0.998
Ccrd_007767
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.994
Ccrd_021908
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.994
Ccrd_008306
Ribosomal protein S27a.
   
 0.993
Ccrd_002292
Ribosomal protein S27a.
   
 0.993
Ccrd_004564
Nucleic acid-binding, OB-fold; Belongs to the universal ribosomal protein uS17 family.
  
 
 0.989
Ccrd_022781
Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family.
  
 0.989
Ccrd_015456
Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family.
  
 0.989
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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