STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_022509WD40 repeat-containing protein. (1395 aa)    
Predicted Functional Partners:
Ccrd_011894
mRNA decapping protein 2, Box A.
    
 0.936
Ccrd_014759
mRNA decapping protein 2, Box A.
    
 0.936
Ccrd_024746
Dcp1-like decapping.
    
 0.921
Ccrd_007376
Dcp1-like decapping.
    
 0.921
Ccrd_013322
Dcp1-like decapping.
    
 0.921
Ccrd_025436
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
   
 0.906
Ccrd_007914
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
 0.774
Ccrd_006841
DNA/RNA helicase, DEAD/DEAH box type, N-terminal.
    
 0.774
Ccrd_008904
DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Belongs to the DEAD box helicase family.
    
 0.774
Ccrd_006839
DNA/RNA helicase, DEAD/DEAH box type, N-terminal.
    
 0.774
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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