STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_022581Uncharacterized protein. (134 aa)    
Predicted Functional Partners:
Ccrd_014681
Lateral organ boundaries domain-containing protein.
  
     0.535
Ccrd_024536
Uncharacterized protein.
  
     0.534
Ccrd_023595
Lateral organ boundaries domain-containing protein.
  
     0.534
Ccrd_018415
Lateral organ boundaries domain-containing protein.
  
     0.534
Ccrd_019240
Lateral organ boundaries domain-containing protein.
  
     0.534
Ccrd_011352
Lateral organ boundaries domain-containing protein.
  
     0.534
Ccrd_022202
DOG1 domain-containing protein.
  
     0.533
Ccrd_005275
LOB domain-containing protein.
  
     0.532
Ccrd_024331
Cellulose synthase.
  
     0.529
Ccrd_013866
Uncharacterized protein.
  
     0.529
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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