STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_020256Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type. (318 aa)    
Predicted Functional Partners:
Ccrd_025577
Allene oxide cyclase.
  
     0.525
Ccrd_020802
Ovate protein family, C-terminal.
  
     0.516
Ccrd_025820
Uncharacterized protein.
  
     0.514
Ccrd_026493
Uncharacterized protein.
  
     0.511
Ccrd_024568
GRAS domain-containing protein; Belongs to the GRAS family.
  
     0.508
Ccrd_008094
Polyketide cyclase/dehydrase.
  
     0.508
Ccrd_026400
Allene oxide cyclase.
  
     0.500
Ccrd_006580
Polyketide cyclase/dehydrase.
  
     0.499
Ccrd_018895
Allene oxide cyclase.
  
     0.493
Ccrd_024915
Transcription factor GRAS; Belongs to the GRAS family.
  
     0.492
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.