STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_017978GIY-YIG domain-containing protein. (387 aa)    
Predicted Functional Partners:
Ccrd_004022
Uncharacterized protein.
   
 0.906
Ccrd_007459
Uncharacterized protein.
   
 0.906
Ccrd_017954
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
    
 0.846
Ccrd_004097
DUF1767 domain-containing protein.
    
 0.780
Ccrd_014223
DNA repair nuclease, XPF-type/Helicase.
   
 0.767
Ccrd_021432
AA_TRNA_LIGASE_II domain-containing protein.
   
 0.741
Ccrd_013816
Uncharacterized protein.
   
 0.741
Ccrd_012656
Aminoacyl-tRNA synthetase, class II.
   
 0.741
Ccrd_006030
Aminoacyl-tRNA synthetase, class II.
   
 0.741
Ccrd_017922
Uncharacterized protein.
   
 0.741
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.