STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_017922Uncharacterized protein. (458 aa)    
Predicted Functional Partners:
GATB
Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
  
 0.932
Ccrd_006994
Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.880
Ccrd_013373
Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.880
Ccrd_011448
Aminoacyl-tRNA synthetase, class II.
  
 0.820
Ccrd_014715
Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.819
Ccrd_001142
Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.817
Ccrd_025256
Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.816
Ccrd_006397
Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.796
Ccrd_020719
Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.796
Ccrd_013096
DNA repair protein rad10.
   
 0.791
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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