STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_017816Target SNARE coiled-coil domain-containing protein. (118 aa)    
Predicted Functional Partners:
Ccrd_016797
Syntaxin/epimorphin, conserved site-containing protein; Belongs to the syntaxin family.
   
 0.996
Ccrd_017654
Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.986
Ccrd_012125
Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
   
 0.975
Ccrd_007444
Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
   
 0.975
Ccrd_007876
Armadillo-like helical.
    
 0.968
Ccrd_002547
Armadillo-like helical.
    
 0.968
Ccrd_025288
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
   
 0.963
Ccrd_020452
Syntaxin/epimorphin, conserved site-containing protein; Belongs to the syntaxin family.
   
 0.963
Ccrd_025113
Golgi SNAP receptor complex, subunit 1.
    
 0.937
Ccrd_026207
Longin domain-containing protein; Belongs to the synaptobrevin family.
    
 0.937
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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