STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_017718Homeodomain-like protein. (549 aa)    
Predicted Functional Partners:
Ccrd_022979
Uncharacterized protein.
  
     0.507
Ccrd_000987
Nucleic acid-binding, OB-fold.
  
 
   0.506
Ccrd_026834
Uncharacterized protein.
  
     0.495
Ccrd_004982
Uncharacterized protein.
  
     0.495
Ccrd_015509
Uncharacterized protein.
  
     0.489
Ccrd_004936
Uncharacterized protein.
  
     0.483
Ccrd_001689
Uncharacterized protein.
  
 
  0.480
Ccrd_024416
Uncharacterized protein.
  
 
  0.479
Ccrd_004404
Uncharacterized protein.
  
 
  0.478
Ccrd_013854
Gibberellin regulated protein.
  
     0.473
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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