STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_017396Aminotransferase, class I/classII. (302 aa)    
Predicted Functional Partners:
Ccrd_010900
Alanine racemase/group IV decarboxylase, C-terminal; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.707
Ccrd_007271
4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.606
Ccrd_007270
Uncharacterized protein.
   
 
 0.606
Ccrd_012320
4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.606
Ccrd_019510
Probable methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P).
  
  
 0.604
Ccrd_011144
Probable methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P).
  
  
 0.604
Ccrd_012064
Diaminopimelate epimerase, active site-containing protein.
  
 
 0.539
Ccrd_004557
Carbon-nitrogen hydrolase.
  
 
 0.530
Ccrd_016917
Dihydrodipicolinate reductase, bacterial/plant.
    
 0.529
Ccrd_019526
Homogentisate 1,2-dioxygenase.
   
  
 0.520
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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