STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_016985Uncharacterized protein. (356 aa)    
Predicted Functional Partners:
Ccrd_009819
Protein translocase subunit SecY.
      
 0.667
Ccrd_007585
Ankyrin repeat-containing protein.
   
  
 0.557
Ccrd_004977
Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.
   
  
 0.543
Ccrd_003390
AAA+ ATPase domain-containing protein.
   
  
 0.542
Ccrd_025587
Membrane insertase OXA1/ALB3/YidC.
   
  
 0.542
Ccrd_006830
SRP54 domain-containing protein.
      
 0.528
Ccrd_002600
Membrane insertase OXA1/ALB3/YidC.
      
 0.522
Ccrd_005889
Twin-arginine translocation protein TatA/B/E.
   
  
 0.501
Ccrd_024559
Twin-arginine translocation protein TatA/B/E.
   
  
 0.501
Ccrd_000260
Sec-independent periplasmic protein translocase TatC.
   
  
 0.460
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.