STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_016604Acetolactate synthase, small subunit. (512 aa)    
Predicted Functional Partners:
Ccrd_015471
Acetolactate synthase.
 
 0.999
Ccrd_012776
Thiamine pyrophosphate enzyme, central domain-containing protein; Belongs to the TPP enzyme family.
  
 0.996
Ccrd_021827
Threonine dehydratase.
  
 
 0.993
Ccrd_010410
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
  
 
 0.988
Ccrd_021470
2-isopropylmalate synthase LeuA, allosteric (Dimerization) domain-containing protein.
  
 
 0.943
Ccrd_021458
Aldolase-type TIM barrel; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
 
 0.943
Ccrd_018739
Aspartate-semialdehyde dehydrogenase, beta-type.
  
 
 0.939
Ccrd_025844
GHMP kinase, ATP-binding, conserved site-containing protein.
  
 
 0.913
Ccrd_020507
Ceramide glucosyltransferase.
  
 
 0.912
Ccrd_002511
Uncharacterized protein.
  
 
 0.912
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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