STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_016456Uncharacterized protein. (332 aa)    
Predicted Functional Partners:
Ccrd_013691
Uncharacterized protein.
  
  
  0.538
Ccrd_022036
AP180 N-terminal homology (ANTH) domain-containing protein.
  
  
  0.534
Ccrd_010569
F-box domain, cyclin-like protein.
  
 
  0.528
Ccrd_007563
DUF4005 domain-containing protein.
  
     0.500
Ccrd_014790
F-box domain, cyclin-like protein.
  
     0.494
Ccrd_002485
Uncharacterized protein.
  
     0.492
Ccrd_007386
Ovate protein family, C-terminal.
  
     0.491
Ccrd_012291
Ternary complex factor MIP1, leucine-zipper.
  
     0.490
Ccrd_006268
Uncharacterized protein.
  
     0.489
Ccrd_005315
DUF4378 domain-containing protein.
  
  
  0.488
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
Server load: low (20%) [HD]