STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_015914Uncharacterized protein. (163 aa)    
Predicted Functional Partners:
Ccrd_017227
Uncharacterized protein.
  
     0.519
Ccrd_020892
Cellulose synthase.
  
     0.503
Ccrd_000793
Gnk2-homologous domain-containing protein.
  
     0.498
Ccrd_025900
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
     0.496
Ccrd_023156
Uncharacterized protein.
  
     0.494
Ccrd_016028
Myc-type, basic helix-loop-helix (BHLH) domain-containing protein.
  
     0.475
Ccrd_017924
Uncharacterized protein.
  
     0.467
Ccrd_010130
Uncharacterized protein.
  
     0.466
Ccrd_007849
YABBY protein.
  
     0.464
Ccrd_013860
Uncharacterized protein.
  
     0.464
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.