STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_014820Uncharacterized protein. (160 aa)    
Predicted Functional Partners:
Ccrd_003741
Uncharacterized protein.
  
   
 0.691
Ccrd_010775
PB1 domain-containing protein.
  
     0.516
Ccrd_001195
Cystatin.
  
     0.513
Ccrd_026590
CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.
  
     0.510
Ccrd_005491
Gibberellin regulated protein.
  
     0.505
Ccrd_005350
Uncharacterized protein.
  
     0.500
Ccrd_021061
Uncharacterized protein.
  
     0.494
Ccrd_007117
Uncharacterized protein.
  
     0.491
Ccrd_013855
Gibberellin regulated protein.
  
     0.490
Ccrd_019650
C2 calcium-dependent membrane targeting.
  
     0.490
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.