STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_014279Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (751 aa)    
Predicted Functional Partners:
Ccrd_012499
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 0.978
Ccrd_005242
Phosphodiesterase.
   
 0.968
Ccrd_017521
Vacuolar protein sorting-associated protein 26.
   
 0.963
Ccrd_011392
Vacuolar protein sorting-associated protein 26.
   
 0.963
Ccrd_014025
Immunoglobulin E-set.
   
 0.963
Ccrd_002123
Photosystem II HCF136, stability/assembly factor.
    
 
 0.786
Ccrd_018162
Phox homologous domain-containing protein.
   
 
 0.772
Ccrd_016853
Phox homologous domain-containing protein.
   
 
 0.753
Ccrd_011627
Phox homologous domain-containing protein.
   
 
 0.753
Ccrd_010292
Phox homologous domain-containing protein.
   
 
 0.753
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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