STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_014179Uncharacterized protein. (664 aa)    
Predicted Functional Partners:
Ccrd_011904
JmjC domain-containing protein.
    
 0.813
Ccrd_015864
Tetratricopeptide-like helical.
    
 0.794
Ccrd_017364
Helicase, C-terminal.
    
 0.791
Ccrd_005483
RNA polymerase II accessory factor, Cdc73.
    
 0.790
Ccrd_019816
DNA-directed RNA polymerase, 30-40kDa subunit, conserved site-containing protein.
    
 0.776
Ccrd_005383
Post-SET domain-containing protein.
    
 0.744
Ccrd_013530
Plus-3.
    
 0.726
Ccrd_012262
RuvB-like helicase; Belongs to the RuvB family.
    
 0.720
Ccrd_000534
F-box domain, cyclin-like protein.
    
 0.717
Ccrd_000826
E3 ubiquitin protein ligase.
    
 0.717
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
Server load: low (22%) [HD]