STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_013998Uncharacterized protein. (222 aa)    
Predicted Functional Partners:
Ccrd_019970
Syntaxin, N-terminal.
    
 0.920
Ccrd_006759
Vacuolar protein sorting-associated protein 51.
    
 0.857
Ccrd_005278
t-SNARE.
    
 0.784
Ccrd_000163
t-SNARE.
    
 0.784
Ccrd_019146
t-SNARE.
    
 0.784
Ccrd_023269
V-SNARE domain-containing protein.
    
 0.784
Ccrd_025060
Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.774
Ccrd_024717
NSF attachment protein.
    
 0.772
Ccrd_019646
Vacuolar protein sorting-associated protein 11 homolog; Involved in regulating membrane fusion at the tonoplast and the prevacuolar compartment.
    
 
 0.767
Ccrd_003219
NSF attachment protein.
    
 0.757
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.