STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_012953Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (453 aa)    
Predicted Functional Partners:
Ccrd_019698
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 0.990
Ccrd_004169
Transket_pyr domain-containing protein.
   
 
 0.987
Ccrd_020418
Transket_pyr domain-containing protein.
   
 
 0.987
Ccrd_009923
2-oxoglutarate dehydrogenase, E1 component.
   
 
 0.987
Ccrd_012888
Isocitrate and isopropylmalate dehydrogenase family.
  
 0.977
Ccrd_007513
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
 0.967
Ccrd_021789
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
 0.967
Ccrd_021126
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.961
Ccrd_016431
Citrate synthase.
  
 
 0.959
Ccrd_018750
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
  
 
 0.944
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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