STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_011273SM domain found in ataxin-2. (496 aa)    
Predicted Functional Partners:
Ccrd_011274
AT hook, DNA-binding motif-containing protein.
      
 0.574
Ccrd_010439
Uncharacterized protein.
  
 
   0.503
Ccrd_023632
Uncharacterized protein.
  
 
   0.485
Ccrd_006324
NmrA-like protein.
  
 
   0.484
Ccrd_013280
Uncharacterized protein.
  
 
  0.483
Ccrd_003198
AP2/ERF domain-containing protein.
  
     0.482
Ccrd_006261
Late embryogenesis abundant protein, LEA-25/LEA-D113.
  
     0.475
Ccrd_017595
Uncharacterized protein.
  
     0.465
Ccrd_006057
Uncharacterized protein.
  
     0.460
Ccrd_008011
zf-RVT domain-containing protein.
  
     0.458
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.