STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_009983Uncharacterized protein. (139 aa)    
Predicted Functional Partners:
Ccrd_022492
Uncharacterized protein.
  
   
 0.555
Ccrd_015195
Uncharacterized protein family, transmembrane-40.
  
   
 0.551
Ccrd_020160
Mog1/PsbP, alpha/beta/alpha sandwich.
  
     0.478
Ccrd_008184
F-box domain, cyclin-like protein.
  
     0.444
Ccrd_018650
Uncharacterized protein.
  
     0.432
Ccrd_020979
Uncharacterized protein.
  
    0.426
Ccrd_013410
Exocyst complex component Sec10-like protein.
  
     0.426
Ccrd_008950
Exocyst complex component Sec10-like protein.
  
     0.423
Ccrd_017123
Uncharacterized protein.
  
  
 0.407
Ccrd_013476
High mobility group (HMG) box domain-containing protein.
      
 0.400
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.