STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_009903BED-type domain-containing protein. (463 aa)    
Predicted Functional Partners:
Ccrd_004278
Uncharacterized protein.
  
     0.474
Ccrd_016411
FAR1 DNA binding domain-containing protein.
  
   
 0.453
Ccrd_017008
BED-type domain-containing protein.
  
 
 
 0.439
Ccrd_016989
SWIM-type domain-containing protein.
  
     0.437
Ccrd_000542
MULE transposase domain-containing protein.
  
     0.432
Ccrd_001608
Zinc finger, SWIM-type.
  
     0.427
Ccrd_026281
DUF4413 domain-containing protein.
  
     0.414
Ccrd_013432
Cysteine alpha-hairpin motif superfamily.
  
     0.410
Ccrd_004433
FAR1 DNA binding domain-containing protein.
  
     0.406
Ccrd_004440
Uncharacterized protein.
  
     0.400
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.