STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_009679Tetratricopeptide-like helical. (497 aa)    
Predicted Functional Partners:
Ccrd_011346
Porphobilinogen deaminase, C-terminal.
  
 0.993
Ccrd_017240
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
  
 0.985
Ccrd_000829
Tetrapyrrole methylase; Belongs to the precorrin methyltransferase family.
  
 
 0.920
Ccrd_019235
CbiX domain-containing protein.
  
 
 0.913
Ccrd_010578
Uroporphyrinogen decarboxylase HemE.
  
 
 0.836
Ccrd_011606
Uroporphyrinogen decarboxylase HemE.
  
 
 0.836
Ccrd_022099
Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family.
  
 
 0.823
Ccrd_004572
Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family.
  
 
 0.823
Ccrd_006588
Coproporphyrinogen III oxidase, aerobic.
     
 0.710
Ccrd_023341
rRNA small subunit methyltransferase I.
    
  0.649
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.