STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_023999Glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family. (100 aa)    
Predicted Functional Partners:
Ccrd_026860
DUF632 domain-containing protein.
  
 
  0.508
Ccrd_017272
Uncharacterized protein.
  
     0.503
Ccrd_020899
Transcription factor GRAS; Belongs to the GRAS family.
  
     0.497
Ccrd_011775
Transcription factor GRAS; Belongs to the GRAS family.
  
     0.496
Ccrd_000661
Protein kinase-like domain-containing protein.
  
 
   0.496
Ccrd_005636
Allene oxide cyclase.
  
     0.489
Ccrd_011744
CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.
  
     0.487
Ccrd_016761
Transcription factor GRAS; Belongs to the GRAS family.
  
     0.486
Ccrd_020208
Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type.
  
     0.483
Ccrd_001137
Uncharacterized protein.
  
     0.481
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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