STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_002455Protein DETOXIFICATION; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. (480 aa)    
Predicted Functional Partners:
Ccrd_024434
Protein kinase, catalytic domain-containing protein.
    
 
 0.691
Ccrd_002494
C4-dicarboxylate transporter/malic acid transport protein.
      
 0.676
Ccrd_025002
Mammalian uncoordinated homology 13, domain 2.
      
 0.524
Ccrd_014281
Zinc finger, RING/FYVE/PHD-type.
      
 0.504
Ccrd_018292
Calycin; Belongs to the calycin superfamily. Lipocalin family.
   
    0.438
Ccrd_008349
Nucleic acid-binding, OB-fold.
   
    0.424
Ccrd_026573
tRNA (Guanine(9)-N(1))-methyltransferase TRM10.
   
 0.414
Ccrd_001208
SAM-dependent MTase TRM10-type domain-containing protein.
   
 0.414
Ccrd_017434
Leucine-rich repeat-containing protein.
      
 0.403
Ccrd_001983
Leucine-rich repeat-containing protein.
      
 0.403
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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