STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_000860AP2/ERF domain-containing protein. (285 aa)    
Predicted Functional Partners:
Ccrd_026315
Uncharacterized protein.
      
 0.503
Ccrd_022847
Zinc finger, Dof-type.
  
     0.470
Ccrd_022968
Zinc finger, Dof-type.
  
    0.443
Ccrd_018611
Zinc finger, Dof-type.
  
     0.443
Ccrd_005715
Zinc finger, Dof-type.
  
     0.442
Ccrd_009073
AP2/ERF domain-containing protein.
  
     0.442
Ccrd_005000
Zinc finger, Dof-type.
  
     0.440
Ccrd_008448
Zinc finger, Dof-type.
  
     0.430
Ccrd_020720
Zinc finger, Dof-type.
  
     0.424
Ccrd_022933
Zinc finger, Dof-type.
  
     0.419
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.