STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_020481Uncharacterized protein. (1106 aa)    
Predicted Functional Partners:
Ccrd_007919
Dimeric alpha-beta barrel.
    
 0.672
Ccrd_004718
G-protein, beta subunit.
    
  0.588
Ccrd_000790
Ureohydrolase; Belongs to the arginase family.
    
 
 0.557
Ccrd_000534
F-box domain, cyclin-like protein.
    
  0.554
Ccrd_025861
Uncharacterized protein.
    
 0.540
Ccrd_020096
Putative S-adenosyl-L-methionine-dependent methyltransferase.
    
 0.540
Ccrd_014115
Uncharacterized protein.
    
 0.540
Ccrd_013718
Uncharacterized protein.
    
 0.540
Ccrd_014144
Uncharacterized protein.
    
 0.540
Ccrd_007004
DNA repair protein Rad50.
    
  0.515
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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