STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_018629Uncharacterized protein. (317 aa)    
Predicted Functional Partners:
Ccrd_004612
BTB/POZ-like protein; Belongs to the NPH3 family.
  
     0.475
Ccrd_016050
PMR5N domain-containing protein.
  
     0.473
Ccrd_018618
Chromo domain-like protein.
  
     0.463
Ccrd_019799
BTB/POZ-like protein; Belongs to the NPH3 family.
  
     0.463
Ccrd_016830
Non-heme dioxygenase N-terminal domain-containing protein.
  
     0.458
Ccrd_006057
Uncharacterized protein.
  
     0.454
Ccrd_002442
Uncharacterized protein.
  
     0.452
Ccrd_008012
UDP-glucuronosyl/UDP-glucosyltransferase.
  
     0.438
Ccrd_014513
ATP binding protein MinD.
      
 0.435
Ccrd_019276
TRAM/LAG1/CLN8 homology domain-containing protein.
  
     0.432
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.