STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_018402Uncharacterized protein. (174 aa)    
Predicted Functional Partners:
Ccrd_016858
Uncharacterized protein.
  
   
 0.542
Ccrd_014605
Uncharacterized protein.
  
   
 0.541
Ccrd_005968
Uncharacterized protein.
  
     0.540
Ccrd_018576
Peptidase S64, Ssy5.
  
     0.539
Ccrd_014732
CRA domain-containing protein.
      
 0.527
Ccrd_024251
Development/cell death domain-containing protein.
  
     0.526
Ccrd_001103
Lipase, GDSL.
  
     0.526
Ccrd_011136
Yippee-like protein.
      
 0.525
Ccrd_025716
Uncharacterized protein.
  
 
   0.522
Ccrd_021898
Uncharacterized protein.
  
     0.520
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.