STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_017303ATPase, AAA-type, core. (190 aa)    
Predicted Functional Partners:
Ccrd_020536
APOBEC/CMP deaminase, zinc-binding.
    
 0.947
Ccrd_003988
APOBEC/CMP deaminase, zinc-binding.
    
 0.947
Ccrd_005750
Aspartate/glutamate/uridylate kinase.
   
 
 0.944
Ccrd_011516
Adenylate kinase; Belongs to the adenylate kinase family.
    
 0.929
Ccrd_013698
Inosine/uridine-preferring nucleoside hydrolase.
   
 0.923
Ccrd_009422
Uncharacterized protein.
     
 0.921
Ccrd_020537
Alkaline phosphatase-like, alpha/beta/alpha.
    
  0.902
Ccrd_001763
Nucleoside phosphatase GDA1/CD39; Belongs to the GDA1/CD39 NTPase family.
   
 
  0.901
Ccrd_024505
Survival protein SurE-like phosphatase/nucleotidase.
     
  0.900
Ccrd_007329
Aquaporin-like protein; Belongs to the GDA1/CD39 NTPase family.
     
  0.900
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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