STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_016214CO/COL/TOC1, conserved site-containing protein. (315 aa)    
Predicted Functional Partners:
Ccrd_008288
Myc-type, basic helix-loop-helix (BHLH) domain-containing protein.
    
 0.986
Ccrd_008355
Transcription factor MYC/MYB N-terminal.
    
 
 0.871
Ccrd_007011
Uncharacterized protein.
    
 0.680
Ccrd_016803
Uncharacterized protein.
    
 0.680
Ccrd_014620
Uncharacterized protein.
    
 0.680
Ccrd_013358
Leucine-rich repeat, cysteine-containing subtype.
    
 0.680
Ccrd_011696
Uncharacterized protein.
    
 0.680
Ccrd_020491
Jas domain-containing protein.
  
 
 
 0.517
Ccrd_002719
Zinc finger, C2H2.
  
     0.511
Ccrd_019122
Transcription factor, TCP.
  
     0.499
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.