STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_013741DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Belongs to the DEAD box helicase family. (731 aa)    
Predicted Functional Partners:
Ccrd_026109
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.999
Ccrd_010909
Nucleotide-binding, alpha-beta plait.
   
 0.998
Ccrd_010543
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.997
Ccrd_017699
Small-subunit processome, Utp14.
   
 0.996
Ccrd_011971
Nucleotide-binding, alpha-beta plait.
   
 
 0.995
Ccrd_003975
BING4, C-terminal domain-containing protein.
   
 0.991
Ccrd_017098
Eukaryotic rRNA processing.
   
 0.990
Ccrd_025024
DNA/RNA helicase, DEAD/DEAH box type, N-terminal.
  
  
0.987
Ccrd_005306
G-protein beta WD-40 repeat-containing protein.
   
 0.987
Ccrd_022600
Anticodon-binding.
   
   0.987
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.