STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_011709Amino acid transporter, transmembrane. (465 aa)    
Predicted Functional Partners:
Ccrd_017603
Amino acid transporter, transmembrane.
  
  
 
0.901
Ccrd_010082
Amino acid transporter, transmembrane.
  
  
 
0.900
Ccrd_005038
E3 Ubiquitin ligase.
    
 
 0.706
Ccrd_003520
E3 Ubiquitin ligase.
    
 
 0.706
Ccrd_003931
Glutamine-Leucine-Glutamine, QLQ.
      
 0.682
Ccrd_011132
No apical meristem (NAM) protein.
      
 0.682
Ccrd_014313
Lateral organ boundaries domain-containing protein.
      
 0.680
Ccrd_012055
LOB domain-containing protein.
      
 0.680
Ccrd_024675
AP2/ERF domain-containing protein.
      
 0.677
Ccrd_004848
Transcription factor, TCP.
      
 0.677
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.