STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_009061Aminotran_1_2 domain-containing protein. (379 aa)    
Predicted Functional Partners:
Ccrd_010900
Alanine racemase/group IV decarboxylase, C-terminal; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.689
Ccrd_005270
Cys/Met metabolism, pyridoxal phosphate-dependent enzyme.
  
 
 0.635
Ccrd_012064
Diaminopimelate epimerase, active site-containing protein.
  
 0.599
Ccrd_019510
Probable methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P).
  
  
 0.540
Ccrd_011144
Probable methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P).
  
  
 0.540
Ccrd_018243
Cys/Met metabolism, pyridoxal phosphate-dependent enzyme.
  
 
 0.530
Ccrd_009461
Cys/Met metabolism, pyridoxal phosphate-dependent enzyme.
  
 
 0.530
Ccrd_016917
Dihydrodipicolinate reductase, bacterial/plant.
    
 0.529
Ccrd_014730
Carbon-nitrogen hydrolase.
  
 
 0.524
Ccrd_012132
Arginine biosynthesis bifunctional protein ArgJ, chloroplastic; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.
  
 
 0.517
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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