Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
PMM0011Protein phosphatase 2C domain; Alternative locus ID: PMED4_00101. (447 aa)    
Predicted Functional Partners:
PMM0923
Conserved hypothetical protein; Alternative locus ID: PMED4_10341.
 
 
 0.966
ftsY
Signal recognition particle docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
     
 0.767
argH
Fumarate lyase:Delta crystallin; Alternative locus ID: PMED4_00111.
       0.671
nusB
Antitermination protein NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.560
PMM0008
Conserved hypothetical protein; Alternative locus ID: PMED4_00071.
       0.559
PMM0013
RNA-binding region RNP-1 (RNA recognition motif); Alternative locus ID: PMED4_00121.
       0.503
PMM0098
Possible Fe-S oxidoreductase; Alternative locus ID: PMED4_01031.
      
 0.489
PMM0007
Conserved hypothetical protein; Alternative locus ID: PMED4_00061.
       0.405
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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