Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PMM0020Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (116 aa)    
Predicted Functional Partners:
recR
RecR protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
  
 0.930
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
  
    0.768
murC
Probable UDP-N-acetylmuramate-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
  
    0.768
PMM0058
Conserved hypothetical protein; Alternative locus ID: PMED4_00601.
  
   
 0.569
gap2
Glyceraldehyde 3-phosphate dehydrogenase(NADP+)(phosphorylating); Citation: AJ245541; Mol Biol Evol 2001 Dec;18(12):2240-2249; Alternative locus ID: PMED4_00221; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
       0.561
PMM0061
YGGT family, conserved hypothetical integral membrane protein; Alternative locus ID: PMED4_00631.
  
  
 0.551
dnaX
DNA polymerase, gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
  
 0.534
PMM0085
Putative potassium channel, VIC family; Alternative locus ID: PMED4_00881.
   
  
 0.512
PMM0073
ABC transporter, membrane component; Alternative locus ID: PMED4_00751.
   
  
 0.501
PMM0002
Conserved hypothetical protein; Alternative locus ID: PMED4_00011.
      
 0.499
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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