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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM0025Cyclophilin-type peptidyl-prolyl cis-trans isomerase; Alternative locus ID: PMED4_00241. (363 aa)    
Predicted Functional Partners:
thiL
Putative thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.828
psaF
Photosystem I PsaF protein (subunit III); Alternative locus ID: PMED4_05171.
  
   0.773
psbO
Photosystem II manganese-stabilizing protein; Alternative locus ID: PMED4_02331.
  
     0.747
PMM0148
Conserved hypothetical protein; Alternative locus ID: PMED4_01541.
  
    0.729
PMM0620
Conserved hypothetical protein; Alternative locus ID: PMED4_06691.
  
     0.729
PMM0680
Conserved hypothetical protein; Alternative locus ID: PMED4_07361.
  
    0.714
PMM1101
Putative ATP-dependent RNA helicase; Alternative locus ID: PMED4_12471; Belongs to the DEAD box helicase family.
  
 0.704
efp
Elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 
 0.697
PMM0529
Conserved hypothetical protein; Alternative locus ID: PMED4_05781.
  
    0.693
PMM1185
Conserved hypothetical protein; Alternative locus ID: PMED4_13501.
  
    0.689
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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