Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PMM1686 | lysA | PMM1686 | PMM1090 | Arginase family; Alternative locus ID: PMED4_18971; Belongs to the arginase family. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.422 |
PMM1686 | speA | PMM1686 | PMM0045 | Arginase family; Alternative locus ID: PMED4_18971; Belongs to the arginase family. | Orn/DAP/Arg decarboxylases family 2; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | 0.944 |
argH | lysA | PMM0012 | PMM1090 | Fumarate lyase:Delta crystallin; Alternative locus ID: PMED4_00111. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.478 |
argH | speA | PMM0012 | PMM0045 | Fumarate lyase:Delta crystallin; Alternative locus ID: PMED4_00111. | Orn/DAP/Arg decarboxylases family 2; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | 0.828 |
lysA | PMM1686 | PMM1090 | PMM1686 | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | Arginase family; Alternative locus ID: PMED4_18971; Belongs to the arginase family. | 0.422 |
lysA | argH | PMM1090 | PMM0012 | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | Fumarate lyase:Delta crystallin; Alternative locus ID: PMED4_00111. | 0.478 |
lysA | speA | PMM1090 | PMM0045 | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | Orn/DAP/Arg decarboxylases family 2; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | 0.434 |
ndk | speA | PMM0046 | PMM0045 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | Orn/DAP/Arg decarboxylases family 2; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | 0.634 |
speA | PMM1686 | PMM0045 | PMM1686 | Orn/DAP/Arg decarboxylases family 2; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | Arginase family; Alternative locus ID: PMED4_18971; Belongs to the arginase family. | 0.944 |
speA | argH | PMM0045 | PMM0012 | Orn/DAP/Arg decarboxylases family 2; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | Fumarate lyase:Delta crystallin; Alternative locus ID: PMED4_00111. | 0.828 |
speA | lysA | PMM0045 | PMM1090 | Orn/DAP/Arg decarboxylases family 2; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.434 |
speA | ndk | PMM0045 | PMM0046 | Orn/DAP/Arg decarboxylases family 2; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.634 |