Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PMM0069Esterase/lipase/thioesterase family active site; Alternative locus ID: PMED4_00711. (642 aa)    
Predicted Functional Partners:
def
Putative formylmethionine deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
     
 0.825
PMM0054
Conserved hypothetical protein; Alternative locus ID: PMED4_00551.
      
 0.641
PMM0067
HIT (Histidine triad) family protein; Alternative locus ID: PMED4_00691.
       0.612
PMM0066
Conserved hypothetical protein; Alternative locus ID: PMED4_00681.
       0.542
PMM0042
Flavoprotein; Alternative locus ID: PMED4_00421.
      
 0.535
PMM0065
ABC transporter, ATP binding protein; Alternative locus ID: PMED4_00671.
       0.496
hli2
Possible high light inducible protein; Has EXXNGXXAMXG motif; Citation: Bhaya et al. (2002) FEMS Microbiol Lett 215:209-219; Alternative locus ID: PMED4_00661.
       0.495
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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