STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pds,crtDPhytoene desaturase; Alternative locus ID: PMED4_01501. (473 aa)    
Predicted Functional Partners:
crtB,pys
Squalene and phytoene synthases; Alternative locus ID: PMED4_01491.
 
 0.994
crtQ
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
  
 
0.930
crtR
Beta carotene hydroxylase.
  
   
 0.881
PMM0148
Conserved hypothetical protein; Alternative locus ID: PMED4_01541.
  
    0.773
psbO
Photosystem II manganese-stabilizing protein; Alternative locus ID: PMED4_02331.
  
     0.773
PMM0620
Conserved hypothetical protein; Alternative locus ID: PMED4_06691.
  
     0.770
psb27
Possible Photosystem II reaction center Psb27 protein; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.
  
    0.768
PMM0680
Conserved hypothetical protein; Alternative locus ID: PMED4_07361.
  
  
 0.760
psb28
Possible Photosystem II reaction center Psb28 protein; Alternative locus ID: PMED4_10371; Belongs to the Psb28 family.
  
    0.758
PMM0905
Conserved hypothetical protein; Alternative locus ID: PMED4_10161.
  
     0.752
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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