STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbcRPutative Rubisco transcriptional regulator; Alternative locus ID: PMED4_01531; Belongs to the LysR transcriptional regulatory family. (317 aa)    
Predicted Functional Partners:
glsF,
Ferredoxin-dependent glutamate synthase, Fd-GOGAT; Alternative locus ID: PMED4_17221.
  
  
 0.682
PMM0148
Conserved hypothetical protein; Alternative locus ID: PMED4_01541.
  
    0.673
rpaB
Two-component response regulator; Alternative locus ID: PMED4_01401.
  
  
 0.633
ndhF
Putative NADH Dehydrogenase (complex I) subunit (chain 5); Alternative locus ID: PMED4_01551.
  
  
 0.631
rnd
Putative ribonuclease D; Alternative locus ID: PMED4_17941.
   
  
 0.573
cpeB
Phycobilisome protein; Green-light absorbing phycoerythrin of unknown function.
  
    0.551
ycf34
Putative Ycf34; Alternative locus ID: PMED4_01461.
  
    0.543
PMM1637
Possible transcriptional regulator; Alternative locus ID: PMED4_18471.
   
  
 0.539
phoB
Two-component response regulator, phosphate; Alternative locus ID: PMED4_07791.
  
  
 0.536
nblS
Two-component sensor histidine kinase; Alternative locus ID: PMED4_15091.
   
  
 0.528
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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