Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PMM0239Conserved hypothetical protein; Alternative locus ID: PMED4_02441. (207 aa)    
Predicted Functional Partners:
PMM0393
Conserved hypothetical protein; Alternative locus ID: PMED4_04341.
  
    0.782
PMM0443
Conserved hypothetical protein; Alternative locus ID: PMED4_04901.
  
    0.781
PMM0600
Conserved hypothetical protein; Alternative locus ID: PMED4_06491.
  
    0.775
som
Possible porin; Alternative locus ID: PMED4_07831; Belongs to the OprB family.
  
     0.775
PMM0824
Conserved hypothetical protein; Alternative locus ID: PMED4_09181.
  
     0.775
PMM0836
Conserved hypothetical protein; Alternative locus ID: PMED4_09301.
  
     0.775
PMM0196
Conserved hypothetical protein; Alternative locus ID: PMED4_02021.
  
     0.774
PMM0573
Conserved hypothetical protein; Alternative locus ID: PMED4_06221.
  
     0.774
PMM0845
Conserved hypothetical protein; Alternative locus ID: PMED4_09401.
  
     0.774
PMM1109
Conserved hypothetical protein; Alternative locus ID: PMED4_12551.
  
     0.774
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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