STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amt1Ammonium transporter family; Alternative locus ID: PMED4_02681. (486 aa)    
Predicted Functional Partners:
glnB
Nitrogen regulatory protein P-II; Alternative locus ID: PMED4_16721; Belongs to the P(II) protein family.
 
 0.997
PMM0212
Conserved hypothetical protein; Alternative locus ID: PMED4_02181.
  
 
 0.945
glsF,
Ferredoxin-dependent glutamate synthase, Fd-GOGAT; Alternative locus ID: PMED4_17221.
 
  
 0.858
glnA
Glutamine synthetase, glutamate--ammonia ligase; Alternative locus ID: PMED4_10311.
  
  
 0.760
ntcA
Global nitrogen regulatory protein, CRP family of transcriptional regulators; Alternative locus ID: PMED4_02511.
      
 0.753
lytB
LytB protein homolog; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
     
 0.657
som-2
Possible porin; Alternative locus ID: PMED4_12651.
   
  
 0.598
chlL,frxC
Protochlorophyllide reductase iron-sulfur ATP-binding protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP.
   
  
 0.570
som-3
Possible porin; Alternative locus ID: PMED4_12671.
   
  
 0.566
sfsA
Putative sugar fermentation stimulation protein; Alternative locus ID: PMED4_02671; Belongs to the SfsA family.
  
    0.551
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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