STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM0280Retinal pigment epithelial membrane protein; Alternative locus ID: PMED4_02851. (507 aa)    
Predicted Functional Partners:
purM,purG
Phosphoribosyl formylglycinamidine cyclo-ligase; Alternative locus ID: PMED4_17991.
      
 0.742
hisB
Imidazoleglycerol-phosphate dehydratase; Alternative locus ID: PMED4_02861.
       0.684
fabI
Enoyl-[acyl-carrier-protein] reductase; Alternative locus ID: PMED4_02871.
       0.632
CobS
Cobalamin-5-phosphate synthase CobS; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
   
  
 0.593
purC
SAICAR synthetase; Alternative locus ID: PMED4_15071; Belongs to the SAICAR synthetase family.
   
  
 0.517
PMM0283
Conserved hypothetical protein; Alternative locus ID: PMED4_02881.
  
    0.455
PMM1153
Predicted alpha/beta hydrolase superfamily protein; Alternative locus ID: PMED4_13131.
  
     0.448
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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