STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM0290Possible ABC transporter, ATP binding component; Alternative locus ID: PMED4_02951. (272 aa)    
Predicted Functional Partners:
PMM1324
Possible transporter, membrane component; Alternative locus ID: PMED4_14921.
 
 0.999
PMM0289
Possible ABC transporter; Alternative locus ID: PMED4_02941.
 
 0.997
PMM0449
Putative multidrug efflux ABC transporter; Alternative locus ID: PMED4_04961.
   
0.923
PMM0291
Conserved hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
    0.641
PMM0370
Putative cyanate ABC transporter, substrate binding protein; Alternative locus ID: PMED4_04031.
 
 
    0.571
PMM1338
Chloroplast outer envelope membrane protein homolog; Alternative locus ID: PMED4_15061.
 
   
 0.569
PMM0421
Putative ABC transporter, oligopeptides; Alternative locus ID: PMED4_04651.
 
 
    0.443
rpsE,rps5
30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
  
     0.438
dnaX
DNA polymerase, gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
    0.429
glsF,
Ferredoxin-dependent glutamate synthase, Fd-GOGAT; Alternative locus ID: PMED4_17221.
       0.424
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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