Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rubProbable rubredoxin; Alternative locus ID: PMED4_03001. (142 aa)    
Predicted Functional Partners:
PMM0296
Conserved hypothetical protein; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity.
 
   
 0.972
tpx
Thioredoxin peroxidase; Alternative locus ID: PMED4_09521.
  
  
 0.883
PMM0101
Conserved hypothetical protein; Alternative locus ID: PMED4_01061.
  
  
 0.790
PMM0529
Conserved hypothetical protein; Alternative locus ID: PMED4_05781.
  
    0.779
PMM0680
Conserved hypothetical protein; Alternative locus ID: PMED4_07361.
  
    0.779
PMM1185
Conserved hypothetical protein; Alternative locus ID: PMED4_13501.
  
  
 0.779
PMM0944
Conserved hypothetical protein; Alternative locus ID: PMED4_10551.
  
   
 0.774
psb27
Possible Photosystem II reaction center Psb27 protein; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.
  
     0.762
psbP
Photosystem II oxygen evolving complex protein PsbP; Alternative locus ID: PMED4_12441.
  
    0.762
psbO
Photosystem II manganese-stabilizing protein; Alternative locus ID: PMED4_02331.
  
    0.759
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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