STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMM0310Carbohydrate kinase, FGGY family; Alternative locus ID: PMED4_03161. (409 aa)    
Predicted Functional Partners:
rpe,
Ribulose-phosphate 3-epimerase; Alternative locus ID: PMED4_08511.
    
 0.938
gnd
6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
    
 0.872
PMM1413
Conserved hypothetical; Alternative locus ID: PMED4_16181.
  
  
 0.868
rpiA,
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
    
 0.862
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
       0.828
PMM0555
Putative carboxysome peptide B; Alternative locus ID: PMED4_06041.
  
    0.748
csoS3
Carboxysome shell protein CsoS3; Alternative locus ID: PMED4_06021.
  
    0.744
PMM0554
Putative carboxysome peptide A; Alternative locus ID: PMED4_06031.
  
    0.742
csoS2
Carboxysome shell protein CsoS2; Alternative locus ID: PMED4_06011.
  
    0.736
PMM0547
Conserved hypothetical protein; Alternative locus ID: PMED4_05961.
  
    0.720
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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