Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PMM0336Conserved hypothetical; Alternative locus ID: PMED4_03461. (169 aa)    
Predicted Functional Partners:
psbO
Photosystem II manganese-stabilizing protein; Alternative locus ID: PMED4_02331.
  
  
  0.777
psbP
Photosystem II oxygen evolving complex protein PsbP; Alternative locus ID: PMED4_12441.
  
 
  0.770
psb28
Possible Photosystem II reaction center Psb28 protein; Alternative locus ID: PMED4_10371; Belongs to the Psb28 family.
  
  
  0.699
crtL2
Putative lycopene epsilon cyclase; Alternative locus ID: PMED4_06831.
  
 0.690
PMM1185
Conserved hypothetical protein; Alternative locus ID: PMED4_13501.
  
     0.685
PMM0529
Conserved hypothetical protein; Alternative locus ID: PMED4_05781.
  
     0.666
PMM0061
YGGT family, conserved hypothetical integral membrane protein; Alternative locus ID: PMED4_00631.
  
    0.644
rub
Probable rubredoxin; Alternative locus ID: PMED4_03001.
  
   
 0.626
PMM0101
Conserved hypothetical protein; Alternative locus ID: PMED4_01061.
  
    0.622
PMM0296
Conserved hypothetical protein; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity.
  
     0.613
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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